Table of contents

LG-covid19-HOTP analysis is organized in the following way.

• Maps & self-navigated surf-search
• Abstract
• New (most recent articles)
• Data description
• Basic metadata analysis & visualization
• Top lists
  • [A] Top 10 HOTP-FG articles (within HOTP-FG)
  • [B] Top 10 HOTP-FG articles (within HOTP)
  • [C] Top 10 HOTP-FG articles (by Crossref counts)
• Seed lists
• Sources, tools, Change log, & acknowledgements

Maps & self-navigated surf-search

We provide below two maps of the articles in the current data collection. On each map, a cluster indicates closer relationships in concepts, themes or methodologies.

New features since April 11: Self-navigated surf-search

Clicking on each map will activate self-navigated surf-search, in the following three modes with seamless transition.

• The default setting is in the surf mode. One surfs each map by moving the cursor around. When the cursor is on top of an article dot, the article title pops up. Move the cursor around to browse related articles nearby. A click on the dot leads one to the article source.

• In the DOI search mode, enter a DOI (digital object identification) code in the search window, the article will be located and highlighted on the map. One can then surf around.

• In the keyword search mode, enter a keyword (such as coronavirus, Ebola, influenza, ACE2, Zika), articles with their titles containing the keyword are highlighted in two colors, red and blue. Red dots are the articles published in 2020; blue, before 2020.

Here are the two maps. Enjoy the surf-search!

Co-reference map & self-navigated surf-search

Statistical neighbor embedding of 485,097 articles by co-reference similarity, i.e., the similarity in outCitation lists, via the use of SG-t-SNE [link]. The closer two article dots are, the more common articles they have in their reference lists according to our literature graph. A dot cluster indicates closer relationships in concepts, themes or methodologies. Click on the map to activate self-navigated surf-search.

Co-inCitation map & self-navigated surf-search

Statistical neighbor embedding of 485,097 articles by similarity between inCitation lists according to our literature graph, via SG-t-SNE [link]. The closer two article dots are, the more articles that cite the two articles together. A dot cluster indicates closer relationships in concepts, themes or methodologies. Click on the map to activate self-navigated surf-search

Abstract

Parallel to the dataset CORD-19 of scholarly articles, we provide the literature graph LG-covid19-HOTP (10.5281/zenodo.3728215) composed of not only articles (graph nodes) that are relevant to the study of coronavirus, but also in and out citation links (directed graph edges) to base navigation and search among the articles. The article records are related and connected, not isolated. The graph has been updated weekly since March 26, 2020. The current graph includes 42,279 hot-off-the-press (HOTP) articles since January 2020. It contains 485,097 articles and 4,259,944 links. The link-to-node ratio is remarkably higher than some other existing literature graphs. In addition to the dataset we provide more functionalities at lg-covid-19-hotp.cs.duke.edu such as new articles, weekly meta-data analysis in terms of publication growth over time, ranking by citation, and statistical near-neighbor embedding maps by similarity in co-citation, and similarity in co-reference. Since April 11, we have enabled a novel functionality - self-navigated surf-search over the maps. At the site we also take courtesy input of COVID-19 articles that are missing from the current collection. The data set is also available through Kaggle.

New (most recent articles)

• ChAdOx1 nCoV-19 vaccination prevents SARS-CoV-2 pneumonia in rhesus macaques (May 13, 2020)
• CRISPR–Cas12-based detection of SARS-CoV-2 (April 16, 2020)
• The COVID-19 vaccine development landscape (April 9, 2020)
• The handbook of COVID-19 Prevention and Treatment (March, 2020) (no DOI available, funded by Jack Ma)

• Using echocardiography to guide the treatment of novel coronavirus pneumonia (December 01, 2020)
• COVID-19 the showdown for mass casualty preparedness and management: the Cassandra Syndrome (December 01, 2020)
• Mathematical model of infection kinetics and its analysis for COVID-19, SARS and MERS (August 01, 2020)
• Severe Acute Respiratory Syndrome Coronavirus 2 Infection among Returnees to Japan from Wuhan, China, 2020 (July 01, 2020)
• Aerosol and Surface Distribution of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospital Wards, Wuhan, China, 2020 (July 01, 2020)
• Clinical Characteristics of Patients Hospitalized with Coronavirus Disease, Thailand (July 01, 2020)
• Early Introduction of Severe Acute Respiratory Syndrome Coronavirus 2 into Europe (July 01, 2020)
• Rhabdomyolysis as Potential Late Complication Associated with COVID-19 (July 01, 2020)
• Severe Acute Respiratory Syndrome Coronavirus 2 RNA Detected in Blood Donations (July 01, 2020)
• Severe Acute Respiratory Syndrome Coronavirus 2 Shedding by Travelers, Vietnam, 2020 (July 01, 2020)
• Severe Acute Respiratory Syndrome Coronavirus 2 Infection among Returnees to Japan from Wuhan, China, 2020 (July 01, 2020)
• Aerosol and Surface Distribution of Severe Acute Respiratory Syndrome Coronavirus 2 in Hospital Wards, Wuhan, China, 2020 (July 01, 2020)
• Case-Fatality Risk Estimates for COVID-19 Calculated by Using a Lag Time for Fatality (June 01, 2020)
• COVID-19 in 2 Persons with Mild Upper Respiratory Tract Symptoms on a Cruise Ship, Japan (June 01, 2020)
• Detection of Novel Coronavirus by RT-PCR in Stool Specimen from Asymptomatic Child, China (June 01, 2020)
• Lack of Vertical Transmission of Severe Acute Respiratory Syndrome Coronavirus 2, China (June 01, 2020)
• Severity of coronavirus respiratory tract infections in adults admitted to acute care in Toronto, Ontario (May 01, 2020)
• COVID-19 in a patient with long-term use of glucocorticoids: A study of a familial cluster (May 01, 2020)
• Myocardial localization of coronavirus in COVID-19 cardiogenic shock: COVID-19 does not spare the heart (April 11, 2020)
• Exploring possible mechanisms for COVID-19 induced thrombocytopenia: Unanswered Questions (April 11, 2020)
• Classification system and case definition for SARS-CoV-2 infection in pregnant women, fetuses, and neonates (April 11, 2020)
• Caring for Miners During the Coronavirus Disease-2019 (COVID-19) Pandemic (April 11, 2020)
• Cluster of coronavirus disease 2019 (Covid-19) in the French Alps, 2020 (April 11, 2020)
• Letter: Strategies for Prevention and Control of 2019 Novel Coronavirus Infection Among Medical Staff (April 11, 2020)
• Letter: Academic Neurosurgery Department Response to COVID-19 Pandemic: The University of Miami/Jackson Memorial Hospital Model (April 11, 2020)
• COVID-19: How Can Rural Community Pharmacies Respond to the Outbreak? (April 11, 2020)
• COVID-19 and SARS: differences and similarities (April 11, 2020)
• Urgent Considerations for the Neuro-oncologic Treatment of Patients with Gliomas During the COVID-19 Pandemic (April 11, 2020)
• Myocardial localization of coronavirus in COVID-19 cardiogenic shock: COVID-19 does not spare the heart (April 11, 2020)
• Protecting Labor and Delivery Personnel from COVID-19 during the Second Stage of Labor (April 10, 2020)
• Plasminogen improves lung lesions and hypoxemia in patients with COVID-19 (April 10, 2020)
• Predictors for imaging progression on chest CT from coronavirus disease 2019 (COVID-19) patients (April 10, 2020)
• Evaluate Severe Acute Respiratory Syndrome Coronavirus 2 Infectivity by Pseudoviral Particles (April 10, 2020)
• Clinical and demographic characteristics of patients dying from COVID-19 in Italy versus China (April 10, 2020)
• Case Report: Death Due to Novel Coronavirus Disease (COVID-19) in Three Brothers (April 10, 2020)
• Fatal outcome in a liver transplant recipient with COVID-19 (April 10, 2020)
• Novel Coronavirus (SARS-CoV-2) Infection in A Renal Transplant Recipient: Case Report (April 10, 2020)
• First case of COVID-19 complicated with fulminant myocarditis: a case report and insights (April 10, 2020)
• Rheumatologists perspective on coronavirus disease 19 (COVID-19) and potential therapeutic targets (April 10, 2020)
• Managing Cutaneous Immune-Mediated Diseases During the COVID-19 Pandemic (April 10, 2020)
• Coronavirus disease 2019 (COVID-19): we dont leave women alone (April 10, 2020)
• Halting coronavirus polymerase (April 10, 2020)
• Structure of the RNA-dependent RNA polymerase from COVID-19 virus (April 10, 2020)
• Compassionate Use of Remdesivir for Patients with Severe Covid-19 (April 10, 2020)
• Joint International Collaboration to Combat Mental Health Challenges During the Coronavirus Disease 2019 Pandemic (April 10, 2020)
• The Mental Health Consequences of COVID-19 and Physical Distancing: The Need for Prevention and Early Intervention (April 10, 2020)
• The Spectrum of Neurologic Disease in the Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic Infection: Neurologists Move to the Frontlines (April 10, 2020)
• Neurologic Manifestations of Hospitalized Patients With Coronavirus Disease 2019 in Wuhan, China (April 10, 2020)
• Caring for Patients With Cancer During the COVID-19 Outbreak in Italy (April 10, 2020)
• Clinical Characteristics of Patients Who Died of Coronavirus Disease 2019 in China (April 10, 2020)
• King Lear Under COVID-19 Lockdown (April 10, 2020)
• Public Health Interventions for COVID-19: Emerging Evidence and Implications for an Evolving Public Health Crisis (April 10, 2020)
• Seasonal Influenza Activity During the SARS-CoV-2 Outbreak in Japan (April 10, 2020)
• Association of Public Health Interventions With the Epidemiology of the COVID-19 Outbreak in Wuhan, China (April 10, 2020)
• Presymptomatic Transmission of SARS-CoV-2  Singapore, January 23March 16, 2020 (April 10, 2020)
• A cut above COVID-19- surgical perspectives from a public health institution in Singapore during a coronavirus epidemic: A cut above COVID-19- surgical perspectives from a public health institution in Singapore during a coronavirus epidemic (April 10, 2020)
• SARS-CoV-2 and COVID-19 in older adults: what we may expect regarding pathogenesis, immune responses, and outcomes (April 10, 2020)
• NAS letter suggests normal breathing can expel coronavirus (April 10, 2020)
• Association of Public Health Interventions With the Epidemiology of the COVID-19 Outbreak in Wuhan, China (April 10, 2020)
• The Spectrum of Neurologic Disease in the Severe Acute Respiratory Syndrome Coronavirus 2 Pandemic Infection: Neurologists Move to the Frontlines (April 10, 2020)
• Joint International Collaboration to Combat Mental Health Challenges During the Coronavirus Disease 2019 Pandemic (April 10, 2020)
• Neurologic Manifestations of Hospitalized Patients With Coronavirus Disease 2019 in Wuhan, China (April 10, 2020)
• 2019-novel coronavirus survey: knowledge and attitudes of hospital staff of a large Italian teaching hospital (April 10, 2020)
• Handling and Processing of Blood Specimens from Patients with COVID-19 for Safe Studies on Cell Phenotype and Cytokine Storm: Handling and Processing of Blood Specimens from Patients with Covid-19 (April 10, 2020)
• Weathering the pandemic: How the Caribbean Basin can use viral and environmental patterns to predict, prepare and respond to COVID-19 (April 10, 2020)
• Clinical and demographic characteristics of patients dying from COVID-19 in Italy versus China (April 10, 2020)
• The clinical feature of silent infections of novel coronavirus infection (COVID-19) in Wenzhou (April 10, 2020)
• A review on the cleavage priming of the spike protein on coronavirus by angiotensin-converting enzyme-2 and furin (April 10, 2020)
• Protecting Labor and Delivery Personnel from COVID-19 during the Second Stage of Labor (April 10, 2020)
• Plasminogen improves lung lesions and hypoxemia in patients with COVID-19 (April 10, 2020)
• COVID-19 Autopsies, Oklahoma, USA (April 10, 2020)
• Predictors for imaging progression on chest CT from coronavirus disease 2019 (COVID-19) patients (April 10, 2020)
• Safety Considerations in the Laboratory Testing of Specimens Suspected or Known to Contain the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) (April 10, 2020)
• Suicide Mortality and Coronavirus Disease 2019A Perfect Storm? (April 10, 2020)
• Whose life to save? Scarce resources allocation in the COVID-19 outbreak (April 09, 2020)
• Food Safety and COVID-19 (April 09, 2020)
• Ensuring Access to Medications in the US During the COVID-19 Pandemic (April 09, 2020)
• The Role of Tissue Engineering in COVID-19 and Future Viral Outbreaks (April 09, 2020)
• Structure of Mpro from COVID-19 virus and discovery of its inhibitors (April 09, 2020)
• Coronavirus Disease 19 Pandemic and Extracorporeal Therapies in Intensive Care: Bis Peccare in Bello Non Licet (April 09, 2020)
• High prevalence of obesity in severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) requiring invasive mechanical ventilation (April 09, 2020)
• Prevalence of venous thromboembolism in patients with severe novel coronavirus pneumonia (April 09, 2020)
• The hearth of mathematical and statistical modelling during the Coronavirus pandemic (April 09, 2020)
• Detection of novel coronaviruses in bats in Myanmar (April 09, 2020)
• Self-Isolation Compliance In The COVID-19 Era Influenced By Compensation: Findings From A Recent Survey In Israel: A cross sectional study of the adult population of Israel to assess public attitudes toward the COVID-19 outbreak and self-isolation. (April 09, 2020)
• COVID-19 Exposes the Cracks in Our Already Fragile Mental Health System (April 09, 2020)
• Factors associated with prolonged viral RNA shedding in patients with COVID-19 (April 09, 2020)
• Predictors of refractory Coronavirus disease (COVID-19) pneumonia (April 09, 2020)
• Active virological surveillance in backyard ducks in Bangladesh: Detection of avian influenza and gamma-coronaviruses (April 09, 2020)
• Role of Nonstructural Proteins in the Pathogenesis of SARS-CoV-2 (April 09, 2020)
• COVID-19 pandemic: effects and evidence-based recommendations for otolaryngology and head and neck surgery practice (April 09, 2020)
• Impact of Coronavirus (COVID-19) on Otolaryngologic Surgery: A Brief Commentary (April 09, 2020)
• Cardiac and arrhythmic complications in Covid-19 patients (April 09, 2020)
• Comparative replication and immune activation profiles of SARS-CoV-2 and SARS-CoV in human lungs: an ex vivo study with implications for the pathogenesis of COVID-19 (April 09, 2020)
• Coronavirus Epidemic and Geriatric Mental Healthcare in China: How a Coordinated Response by Professional Organizations Helped Older Adults During an Unprecedented Crisis (April 09, 2020)
• Operating Room Guide for Confirmed or Suspected COVID-19 Pregnant Patients Requiring Cesarean Delivery (April 09, 2020)
• Inpatient and outpatient case prioritization for patients with neuro-oncologic disease amid the COVID-19 pandemic: general guidance for neuro-oncology practitioners from the AANS/CNS Tumor Section and Society for Neuro-Oncology (April 09, 2020)
• Why daily death tolls have become unusually important in understanding the coronavirus pandemic (April 09, 2020)
• If a coronavirus vaccine arrives, can the world make enough? (April 09, 2020)
• Thousands of coronavirus tests are going unused in US labs (April 09, 2020)
• Functionally assessing coronavirus entry (April 09, 2020)
• An Urgent Need for Common Cold Units to Study Novel Coronavirus Disease (COVID-19) (April 09, 2020)
• Slowdown of urology residents learning curve during COVID-19 emergency (April 09, 2020)
• Structure of Mpro from COVID-19 virus and discovery of its inhibitors (April 09, 2020)
• Spatio-Temporal Patterns of the 2019-nCoV Epidemic at the County Level in Hubei Province, China (April 08, 2020)
• Development of a Novel, Genome Subtraction-Derived, SARS-CoV-2-Specific COVID-19-nsp2 Real-Time RT-PCR Assay and Its Evaluation Using Clinical Specimens (April 08, 2020)
• Sudden and Complete Olfactory Loss Function as a Possible Symptom of COVID-19 (April 08, 2020)
• Limited transmissibility of coronavirus (SARS-1, MERS, and SARS-2) in certain regions of Africa (April 08, 2020)
• International expansion of a novel SARS-CoV-2 mutant (April 08, 2020)
• Comparative Performance of SARS-CoV-2 Detection Assays using Seven Different Primer/Probe Sets and One Assay Kit (April 08, 2020)
• Lung Involvement Found on Chest CT Scan in a Pre-Symptomatic Person with SARS-CoV-2 Infection: A Case Report (April 07, 2020)
• Attitudes of Anesthesiology Specialists and Residents Toward Patients Infected with the Novel Coronavirus (COVID-19): A National Survey Study (April 06, 2020)
• Infection Control against COVID-19 in Departments of Radiology (April 01, 2020)
• Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay (April 01, 2020)
• Development of Reverse Transcription Loop-mediated Isothermal Amplification (RT-LAMP) Assays Targeting SARS-CoV-2 (April 01, 2020)
• Recommendations on cardiopulmonary resuscitation strategy and procedure for novel coronavirus pneumonia (April 01, 2020)
• SAA is a biomarker to distinguish the severity and prognosis of Coronavirus Disease 2019 (COVID-19) (April 01, 2020)
• Disinfection of N95 respirators by ionized hydrogen peroxide in pandemic coronavirus disease 2019 (COVID-19) due to SARS-CoV-2 (April 01, 2020)
• Coronavirus and analgesics (April 01, 2020)
• Testing for COVID-19 in lung cancer patients (April 01, 2020)
• Tocilizumab, an anti-IL6 receptor antibody, to treat Covid-19-related respiratory failure: a case report (April 01, 2020)
• Bills of Mortality: tracking disease in early modern London (April 01, 2020)
• Centring sexual and reproductive health and justice in the global COVID-19 response (April 01, 2020)
• Regulators split on antimalarials for COVID-19 (April 01, 2020)
• The gendered dimensions of COVID-19 (April 01, 2020)
• Trials of anti-tumour necrosis factor therapy for COVID-19 are urgently needed (April 01, 2020)
• Coronavirus membrane fusion mechanism offers as a potential target for antiviral development (April 01, 2020)
• The COVID-19 pandemic: Important considerations for contact lens practitioners (April 01, 2020)
• Rapid and visual detection of 2019 novel coronavirus (SARS-CoV-2) by a reverse transcription loop-mediated isothermal amplification assay (April 01, 2020)
• Development of Reverse Transcription Loop-mediated Isothermal Amplification (RT-LAMP) Assays Targeting SARS-CoV-2 (April 01, 2020)
• Prolonged viral shedding in feces of pediatric patients with coronavirus disease 2019 (March 01, 2020)
• Porcine Deltacoronavirus Infection and Transmission in Poultry, United States1 (February 01, 2020)
• Molecular epidemiological survey and phylogenetic analysis of bovine respiratory coronavirus in Japan from 2016 to 2018 (January 01, 2020)

• COVID-19 Outbreak Associated with Air Conditioning in Restaurant, Guangzhou, China, 2020 (July 01, 2020)

• Severe Acute Respiratory Syndrome Coronavirus 2 RNA Detected in Blood Donations (July 01, 2020)

• Case-Fatality Risk Estimates for COVID-19 Calculated by Using a Lag Time for Fatality (June 01, 2020)

• Co-infection with SARS-CoV-2 and Influenza A Virus in Patient with Pneumonia, China (June 01, 2020)

• Global shifts in mammalian population trends reveal key predictors of virus spillover risk (April 08, 2020)

• Population-Level Interest and Telehealth Capacity of US Hospitals in Response to COVID-19: Cross-Sectional Analysis of Google Search and National Hospital Survey Data (April 07, 2020)

• PriSeT: Efficient De Novo Primer Discovery (April 07, 2020)

• Translational adaptation of human viruses to the tissues they infect (April 07, 2020)

• A protocol for adding knowledge to Wikidata, a case report (April 07, 2020)

• Out-of-Hospital Cohort Treatment of Coronavirus Disease 2019 Patients with Mild Symptoms in Korea: an Experience from a Single Community Treatment Center (April 06, 2020)

• High-Sensitivity Cardiac Troponin Can Be An Ally in the Fight Against COVID-19 (April 06, 2020)

• The COVID-19 (Coronavirus) Pandemic: Reflections on the Roles of Librarians and Information Professionals (April 06, 2020)

• COVID-19 and liver disease (April 06, 2020)

• Coronavirus Disease (COVID-19): Characteristics in children and considerations for Dentists providing their care (April 06, 2020)

• Impact of the COVID-19 pandemic on Parkinson’s disease and movement disorders: COVID-19 pandemic and PD (April 06, 2020)

• Baseline Characteristics and Outcomes of 1591 Patients Infected With SARS-CoV-2 Admitted to ICUs of the Lombardy Region, Italy (April 06, 2020)

• Novel Coronavirus in Cape Town Informal Settlements: Feasibility of Using Informal Dwelling Outlines to Identify High Risk Areas for COVID-19 Transmission From A Social Distancing Perspective (April 06, 2020)

• Potential harmful effects of discontinuing ACE-inhibitors and ARBs in COVID-19 patients (April 06, 2020)

• Coronavirus Disease 2019 (COVID-19): Considerations for the Competitive Athlete (April 06, 2020)

• COVID-19 infection in a paucisymptomatic infant: Raising the index of suspicion in epidemic settings (April 06, 2020)

• Structural Variations in Human ACE2 may Influence its Binding with SARS-CoV-2 Spike Protein (April 06, 2020)

• About the origin of the first two Sars-CoV-2 infections in Italy: inference not supported by appropriate sequence analysis (April 06, 2020)

• A comparative-descriptive analysis of clinical characteristics in 2019-Coronavirus-infected children and adults (April 06, 2020)

• COVID-19 in pregnancy with comorbidities: More liberal testing strategy is needed (April 06, 2020)

• COVID-19 and Urology: A Comprehensive Review of the Literature (April 06, 2020)

• Computational studies of drug repurposing and synergism of lopinavir, oseltamivir and ritonavir binding with SARS-CoV-2 Protease against COVID-19 (April 06, 2020)

• Covid-19 in South Korea  Challenges of Subclinical Manifestations (April 06, 2020)

• The potential genetic network of human brain SARS-CoV-2 infection (April 06, 2020)

• CovProfile: profiling the viral genome and gene expressions of SARS-COV2 (April 06, 2020)

• Effectiveness of convalescent plasma therapy in severe COVID-19 patients (April 06, 2020)

• Amantadine disrupts lysosomal gene expression; potential therapy for COVID19 (April 05, 2020)

• Potent Antiviral Activities of Type I Interferons to SARS-CoV-2 Infection (April 05, 2020)

• Increasing testing throughput and case detection with a pooled-sample Bayesian approach in the context of COVID-19 (April 05, 2020)

• Atazanavir inhibits SARS-CoV-2 replication and pro-inflammatory cytokine production (April 05, 2020)

• LY6E Restricts the Entry of Human Coronaviruses, including the currently pandemic SARS-CoV-2 (April 05, 2020)

• Indomethacin has a potent antiviral activity against SARS CoV-2 in vitro and canine coronavirus in vivo (April 05, 2020)

• Rapid community-driven development of a SARS-CoV-2 tissue simulator (April 05, 2020)

• One-step RNA extraction for RT-qPCR detection of 2019-nCoV (April 05, 2020)

• SARS-CoV-2 and SARS-CoV differ in their cell tropism and drug sensitivity profiles (April 05, 2020)

• Prediction and Evolution of B Cell Epitopes of Surface Protein in SARS-CoV-2 (April 05, 2020)

• Energetics based epitope screening in SARS CoV-2 (COVID 19) spike glycoprotein by Immuno-informatic analysis aiming to a suitable vaccine development. (April 05, 2020)

• Triphosphates of the Two Components in DESCOVY and TRUVADA are Inhibitors of the SARS-CoV-2 Polymerase (April 05, 2020)

• Topological Analysis of SARS CoV-2 Main Protease (April 05, 2020)

• Computational analysis suggests putative intermediate animal hosts of the SARS-CoV-2 (April 05, 2020)

• A snapshot of SARS-CoV-2 genome availability up to 30th March, 2020 and its implications (April 05, 2020)

• In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication (April 05, 2020)

• Coronavirus hemagglutinin-esterase and spike proteins co-evolve for functional balance and optimal virion avidity (April 05, 2020)

• Analytical Validation of a COVID-19 qRT-PCR Detection Assay Using a 384-well Format and Three Extraction Methods (April 05, 2020)

• Cells and gene expression programs in the adult human heart (April 05, 2020)

• Decrease in ACE2 mRNA expression in aged mouse lung (April 05, 2020)

• Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein (April 05, 2020)

• Leveraging mRNAs sequences to express SARS-CoV-2 antigens in vivo (April 05, 2020)

• Natural products and their derivatives against coronavirus: A review of the non-clinical and pre-clinical data (April 04, 2020)

• Global interim guidance on coronavirus disease 2019 (COVID-19) during pregnancy and puerperium from FIGO and allied partners: Information for healthcare professionals (April 04, 2020)

• Remdesivir for severe acute respiratory syndrome coronavirus 2 causing COVID-19: An evaluation of the evidence (April 04, 2020)

• Clinical features of cases and a cluster of Coronavirus Disease 2019 (COVID-19) in Bolivia imported from Italy and Spain (April 04, 2020)

• Characterization, Pathogenicity and Protective efficacy of a Cell Culture-Derived Porcine Deltacoronavirus (April 04, 2020)

• The COVID-19 pandemic through the lens of a gastroenterology fellow: looking for the silver lining (April 04, 2020)

• The Dilemma of Coronavirus Disease 2019, Aging, and Cardiovascular Disease: Insights From Cardiovascular Aging Science (April 04, 2020)

• In-silico analysis of SARS-CoV-2 genomes: Insights from SARS encoded non-coding RNAs (April 04, 2020)

• Real-time biomedical knowledge synthesis of the exponentially growing world wide web using unsupervised neural networks (April 04, 2020)

• In-silico analysis of SARS-CoV-2 genomes: Insights from SARS encoded non-coding RNAs (April 04, 2020)

• Coronavirus Disease 2019 and Children: What Pediatric Health Care Clinicians Need to Know (April 03, 2020)

• Coronavirus Disease 2019 (COVID-19) Infection and Renin Angiotensin System Blockers (April 03, 2020)

• Detection of SARS-CoV-2 Among Residents and Staff Members of an Independent and Assisted Living Community for Older Adults  Seattle, Washington, 2020 (April 03, 2020)

• Rapid Sentinel Surveillance for COVID-19  Santa Clara County, California, March 2020 (April 03, 2020)

• Barrier Enclosure during Endotracheal Intubation (April 03, 2020)

• COVID-19 in post-transplantation patients- report of two cases (April 03, 2020)

• A familial cluster, including a kidney transplant recipient, of Coronavirus Disease 2019 (COVID-19) in Wuhan, China (April 03, 2020)

• The COVID-19 outbreak in Italy: initial implications for organ transplantation programs. (April 03, 2020)

• Successful Treatment of Severe COVID-19 Pneumonia in a Liver Transplant Recipient (April 03, 2020)

• Detection of antibodies against SARS-CoV-2 in patients with COVID-19 (April 03, 2020)

• The Presence of SARS-CoV-2 RNA in Feces of COVID-19 Patients (April 03, 2020)

• The effectiveness of the quarantine of Wuhan city against the Corona Virus Disease 2019 (COVID-19): well-mixed SEIR model analysis (April 03, 2020)

• Positive Externalities of an Epidemic: The Case of the Corona Virus (COVID-19) in China (April 03, 2020)

• Coronavirus-19 in Geriatrics and Long-Term Care: An Update: Editorial (April 03, 2020)

• Letter by Pilz et al Regarding Article, “Impact of Coronavirus Disease 2019 (COVID-19) Outbreak on ST-Elevation Myocardial Infarction Care in Hong Kong, China” (April 03, 2020)

• Breastfeeding and Coronavirus Disease-2019. Ad interim indications of the Italian Society of Neonatology endorsed by the Union of European Neonatal & Perinatal Societies (April 03, 2020)

• Familial hypercholesterolemia and COVID-19: triggering of increased sustained cardiovascular risk (April 03, 2020)

• Neutrophil-to-Lymphocyte ratio and Lymphocyte-to-C-reactive protein ratio in patients with severe coronavirus disease 2019 (COVID-19): A meta-analysis (April 03, 2020)

• Imaging and Clinical Features of Patients With 2019 Novel Coronavirus SARS-CoV-2: A systematic review and meta-analysis (April 03, 2020)

• Comments on ’Co-infection of SARS-CoV-2 and HIV in a patient in Wuhan city, China (April 03, 2020)

• Safe Handling of Containers of Expressed Human Milk in all Settings During the SARS-CoV-2 (COVID-19) Pandemic (April 03, 2020)

• African nations missing from coronavirus trials (April 03, 2020)

• Infect volunteers to speed a coronavirus vaccine? (April 03, 2020)

• Limited early warnings and public attention to COVID-19 in China, January-February, 2020: a longitudinal cohort of randomly sampled Weibo users (April 03, 2020)

• How is COVID-19 affecting South Korea? What is our current strategy? (April 03, 2020)

• Case Report on Early Diagnosis of COVID-19 (April 03, 2020)

• A dialogue between the editor-in-chief and a deputy editor of a cardiology journal during the coronavirus outbreak: Take-home messages from the Italian experience (April 03, 2020)

• Clinics in Diagnostic Imaging: COVID-19 atypical pneumonia (April 03, 2020)

• Chapter of Gastroenterologists professional guidance on risk mitigation for gastrointestinal endoscopy during COVID-19 pandemic in Singapore (April 03, 2020)

• A consensus statement on the use of angiotensin receptor blockers and angiotensin converting enzyme inhibitors in relation to COVID-19 (corona virus disease 2019) (April 03, 2020)

• Preliminary Estimates of the Prevalence of Selected Underlying Health Conditions Among Patients with Coronavirus Disease 2019  United States, February 12March 28, 2020 (April 03, 2020)

• Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2 (April 03, 2020)

• Hydroxychloroquine: a potential ethical dilemma for rheumatologists during the COVID-19 pandemic (April 02, 2020)

• Practice of endoscopy during COVID-19 pandemic: position statements of the Asian Pacific Society for Digestive Endoscopy (APSDE-COVID statements) (April 02, 2020)

• Gastrointestinal symptoms of 95 cases with SARS-CoV-2 infection (April 02, 2020)

• In reply: Uncertainty in using chest computed tomography in early coronavirus disease (COVID-19) (April 02, 2020)

• Endocrine and metabolic link to coronavirus infection (April 02, 2020)

• How poorer countries are scrambling to prevent a coronavirus disaster (April 02, 2020)

• Tocilizumab, an anti-IL6 receptor antibody, to treat Covid-19-related respiratory failure: a case report (April 02, 2020)

• Insights into The Codon Usage Bias of 13 Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Isolates from Different Geo-locations (April 02, 2020)

• Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-Cov-2 (April 02, 2020)

• An Uncomplicated Delivery in a Patient with Covid-19 in the United States (April 01, 2020)

• Presymptomatic transmission of SARS-CoV-2  Singapore, January 23March 16, 2020 (April 01, 2020)

• Potential legal liability for withdrawing or withholding ventilators during COVID-19: assessing the risks and identifying needed reforms (April 01, 2020)

• Active and effective measures for the care of patients with cancer during the COVID-19 spread in China (April 01, 2020)

• European Society For Emergency Medicine position paper on emergency medical systems response to COVID-19: (April 01, 2020)

• The COVID-19: Role of Ambulatory Surgery Facilities in This Global Pandemic (April 01, 2020)

• Gastrointestinal and Liver Manifestations in Patients with COVID-19: (April 01, 2020)

• Universal Masking in Hospitals in the Covid-19 Era (April 01, 2020)

• Clinical characteristics of non-critically ill patients with novel coronavirus infection (COVID-19) in a Fangcang Hospital (April 01, 2020)

• Diagnostic value and dynamic variance of serum antibody in coronavirus disease 2019 (April 01, 2020)

• The enlightenment from two cases of asymptomatic infection with SARS-CoV-2: is it safe after 14 days of isolation? (April 01, 2020)

• Extracorporeal membrane oxygenation (ECMO): does it have a role in the treatment of severe COVID-19? (April 01, 2020)

• A first Case of Meningitis/Encephalitis associated with SARS-Coronavirus-2 (April 01, 2020)

• Severe Acute Respiratory Syndrome (SARS) and Coronavirus disease-2019 (COVID-19): From Causes to Preventions in Hong Kong (April 01, 2020)

• Remdesivir, lopinavir, emetine, and homoharringtonine inhibit SARS-CoV-2 replication in vitro (April 01, 2020)

• Structural and molecular modeling studies reveal a new mechanism of action of chloroquine and hydroxychloroquine against SARS-CoV-2 infection (April 01, 2020)

• China empowers Internet hospital to fight against COVID-19 (April 01, 2020)

• Virtual screening and repurposing of FDA approved drugs against COVID-19 main protease (April 01, 2020)

• Impact of school closures for COVID-19 on the US health-care workforce and net mortality: a modelling study (April 01, 2020)

• Lung transplantation as therapeutic option in acute respiratory distress syndrome for COVID-19-related pulmonary fibrosis: (April 01, 2020)

• Recommendations for respiratory rehabilitation in adults with COVID-19: (April 01, 2020)

• Microneedle array delivered recombinant coronavirus vaccines: Immunogenicity and rapid translational development (April 01, 2020)

• Dental journals and coronavirus disease (COVID-19): A current view (April 01, 2020)

• Infección por coronavirus (COVID-19) en Anales de Pediatría (April 01, 2020)

• Author reply to Letters to the Editor CT chest findings in coronavirus disease (COVID-19) (April 01, 2020)

• Recommendations and guidance for providing pharmaceutical care services during COVID-19 pandemic: A China perspective (April 01, 2020)

• Identification of Kidney Transplant Recipients with Coronavirus Disease 2019 (April 01, 2020)

• Neutralizing Antibodies against SARS-CoV-2 and Other Human Coronaviruses (April 01, 2020)

• Protocolo de actuación ante la epidemia de enfermedad por coronavirus en los pacientes de diálisis y trasplantados renales (April 01, 2020)

• Incidence of novel coronavirus (2019-nCoV) infection among people under home quarantine in Shenzhen, China (April 01, 2020)

• Clinical features of the first cases and a cluster of Coronavirus Disease 2019 (COVID-19) in Bolivia imported from Italy and Spain (April 01, 2020)

• Characteristics of ocular findings of patients with coronavirus disease 2019 (COVID-19) in Hubei province, China (March 31, 2020)

• COVID-19 in kidney transplant recipients (March 31, 2020)

• Coronavirus pandemic and colorectal surgery: practical advice based on the Italian experience (March 31, 2020)

• Novel Coronavirus-19 (COVID-19) in the Immunocompromised Transplant Recipient: #Flatteningthecurve (March 31, 2020)

• Overview of guidance for endoscopy during the coronavirus disease 2019 (COVID-19) pandemic: Overview of guidance for endoscopy during the coronavirus disease 2019 (COVID-19) pandemic (March 31, 2020)

• Diabetes is a risk factor for the progression and prognosis of COVID-19 (March 31, 2020)

• Potential utilities of mask wearing and instant hand hygiene for fighting SARS-CoV-2 (March 31, 2020)

• COVID-19 epidemic: disease characteristics in children (March 31, 2020)

• CD-sACE2 inclusion compounds: an effective treatment for corona virus disease 2019 (COVID-19) (March 31, 2020)

• Perspectives on coronavirus disease 2019 control measures for ophthalmology clinics based on a Singapore center experience (March 31, 2020)

• Computed tomographic imaging of 3 patients with coronavirus disease 2019 pneumonia with negative virus real-time reverse-transcription polymerase chain reaction test (March 31, 2020)

• COVID-19 Infection in Cancer Patients: Early Observations and Unanswered Questions (March 31, 2020)

• A segregated-team model to maintain cancer care during the COVID-19 outbreak at an academic center in Singapore (March 31, 2020)

• Preliminary Estimates of the Prevalence of Selected Underlying Health Conditions Among Patients with Coronavirus Disease 2019  United States, February 12March 28, 2020 (March 31, 2020)

• Humans, viruses, and the eyean early report from the COVID-19 front line (March 31, 2020)

• COVID-19 in critically ill patients in the seattle region - case series (March 30, 2020)

• Analysis on 54 mortality cases of coronavirus disease 2019 in the Republic of Korea from January 19 to March 10, 2020 (March 30, 2020)

• Headaches Associated with Personal Protective Equipment - A Cross-sectional Study Amongst Frontline Healthcare Workers During COVID-19 (HAPPE Study) (March 30, 2020)

• The experience of high-flow nasal cannula in hospitalized patients with 2019 novel coronavirus-infected pneumonia in two hospitals of Chongqing, China (March 30, 2020)

• Diagnostic performance of chest CT to differentiate COVID-19 pneumonia in non-high-epidemic area in Japan (March 30, 2020)

• Coronavirus disease 2019 (COVID-19) and anti-rheumatic drugs (March 30, 2020)

• Coronavirus disease 2019 (COVID-19) outbreak at the Department of Ophthalmology, Oslo University Hospital, Norway (March 30, 2020)

• Introducing the 21st Century’s New Four Horsemen of the Coronapocalypse (March 30, 2020)

• Novel coronavirus treatment with ribavirin: Groundwork for evaluation concerning COVID-19 (March 30, 2020)

• Performance of VivaDiagTM COVID-19 IgM/IgG Rapid Test is inadequate for diagnosis of COVID-19 in acute patients referring to emergency room department (March 30, 2020)

• Older Clinicians and the Surge in Novel Coronavirus Disease 2019 (COVID-19) (March 30, 2020)

• High population densities catalyze the spread of COVID-19 (March 30, 2020)

• Novel Coronavirus Pneumonia (COVID-19) Progression Course in 17 Discharged Patients: Comparison of Clinical and Thin-Section CT Features During Recovery (March 30, 2020)

• The ACE2 expression in human heart indicates new potential mechanism of heart injury among patients infected with SARS-CoV-2 (March 30, 2020)

• Asymptomatic and Human-to-Human Transmission of SARS-CoV-2 in a 2-Family Cluster, Xuzhou, China (March 30, 2020)

• ReninAngiotensinAldosterone System Inhibitors in Patients with Covid-19 (March 30, 2020)

• No evidence of rapid antiviral clearance or clinical benefit with the combination of hydroxychloroquine and azithromycin in patients with severe COVID-19 infection (March 30, 2020)

• Maternal and neonatal outcomes of pregnant women with COVID-19 pneumonia: a case-control study (March 30, 2020)

• Tracking COVID-19 in Europe: An Infodemiology Study (Preprint) (March 28, 2020)

• RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses (March 28, 2020)

• Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2 (March 27, 2020)

• Internet hospitals help prevent and control the epidemic of COVID-19 in China: a multicenter user profiling study (Preprint) (March 27, 2020)

• COVID-19 Related Misinformation on Social Media: A Qualitative Study from Iran (Preprint) (March 27, 2020)

• Evidence of SARS-CoV-2 infection in returning yravelers from Wuhan, China (March 26, 2020)

• Clinical characteristics of COVID-19-infected cancer patients: A retrospective case study in three hospitals within Wuhan, China (March 26, 2020)

• An artificial intelligence-based first-line defence against COVID-19: digitally screening citizens for risks via a chatbot (March 26, 2020)

• Identifying Locations with Possible Undetected Imported Severe Acute Respiratory Syndrome Coronavirus 2 Cases by Using Importation Predictions (March 24, 2020)

• DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP (March 21, 2020)

• COVID-19 Vaccine Candidates: Prediction and Validation of 174 SARS-CoV-2 Epitopes (March 21, 2020)

• Rhabdomyolysis as Potential Late Complication Associated with COVID-19 (March 20, 2020)

• Early Introduction of Severe Acute Respiratory Syndrome Coronavirus 2 into Europe (March 20, 2020)

• Utilization of a mobile platform for the dissemination of validated institutional measurements during CoVid-19 Outbreak : A practical example in the Childrens Hospital (Preprint) (March 16, 2020)

• Accurate Identification of SARS-CoV-2 from Viral Genome Sequences using Deep Learning (March 14, 2020)

• Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation (March 13, 2020)

• A Locally Transmitted Case of SARS-CoV-2 Infection in Taiwan (March 12, 2020)

• Are patients with hypertension and diabetes mellitus at increased risk for COVID-19 infection? (March 11, 2020)

• Atypical lung feature on chest CT in a lung adenocarcinoma cancer patient infected with COVID-19 (March 09, 2020)

• Direct RNA sequencing and early evolution of SARS-CoV-2 (March 07, 2020)

• Structural and Evolutionary Analysis Indicate that the SARS-CoV-2 Mpro is an Inconvenient Target for Small-Molecule Inhibitors Design (March 02, 2020)

• Strategy for the practice of digestive and oncological surgery during the Covid-19 epidemic (March 01, 2020)

• Perioperative Echocardiography: Key Considerations During the Coronavirus Pandemic (March 01, 2020)

• The cardiovascular burden of coronavirus disease 2019 (COVID-19) with a focus on congenital heart disease (March 01, 2020)

• Importation and Human-to-Human Transmission of a Novel Coronavirus in Vietnam (February 27, 2020)

• An Effective CTL Peptide Vaccine for Ebola Zaire Based on Survivors’ CD8+ Targeting of a Particular Nucleocapsid Protein Epitope with Potential Implications for COVID-19 Vaccine Design (February 27, 2020)

• Investigating the impact of influenza on excess mortality in all ages in Italy during recent seasons (2013/142016/17 seasons) (November 01, 2019)

• Community prevalence of SARS-CoV-2 among patients with influenzalike illnesses presenting to a Los Angeles medical center in March 2020 (March 31, 2020)

• Advice on standardized diagnosis and treatment for spinal diseases during the coronavirus disease 2019 pandemic (March 30, 2020)

• COVID-19 in critically ill patients in the seattle region - case series (March 30, 2020)

• Neuroinfection may potentially contribute to pathophysiology and clinical manifestations of COVID-19 (March 29, 2020)

• COVID-19: face masks and human-to-human transmission (March 29, 2020)

• Precautionary measures needed for ophthalmologists during pandemic of the coronavirus disease 2019 (COVID-19) (March 29, 2020)

• 68 Consecutive patients assessed for COVID-19 infection; experience from a UK regional infectious disease unit (March 29, 2020)

• Art of performing dermoscopy during the times of coronavirus disease (COVID-19): Simple change in approach can save the day! (March 29, 2020)

• European Task Force on Atopic Dermatitis (ETFAD) statement on severe acute respiratory syndrome coronavirus 2 (SARS-Cov-2)-infection and atopic dermatitis (March 29, 2020)

• Phylogenetic analysis of the first four SARS-CoV-2 cases in Chile (March 29, 2020)

• Detectable SARS-CoV-2 Viral RNA in feces of three children during recovery period of COVID-19 pneumonia (March 29, 2020)

• Clinical analysis of pregnant women with 2019 novel coronavirus pneumonia (March 28, 2020)

• Papa Giovanni XXIII Bergamo Hospital at the time of the COVID-19 outbreak: letter from the warfront (March 28, 2020)

• Coronavirus disease 2019 (COVID-19) outbreak: Could pigs be vectors for human infections? (March 28, 2020)

• Organ-protective effect of angiotensin-converting enzyme 2 and its effect on the prognosis of COVID-19 (March 28, 2020)

• Antibody responses to SARS-CoV-2 in patients of novel coronavirus disease 2019 (March 28, 2020)

• Providing pharmacy services during the coronavirus pandemic (March 28, 2020)

• Chronic kidney disease is associated with severe coronavirus disease 2019 (COVID-19) infection (March 28, 2020)

• Surviving sepsis campaign: guidelines on the management of critically ill adults with coronavirus disease 2019 (COVID-19) (March 28, 2020)

• A case of novel coronavirus disease 19 in a chronic hemodialysis patient presenting with gastroenteritis and developing severe pulmonary disease (March 28, 2020)

• Convalescent plasma to treat COVID-19: possibilities and challenges (March 27, 2020)

• Treatment of 5 critically ill patients with COVID-19 with convalescent plasma (March 27, 2020)

• Asymptomatic and presymptomatic SARS-CoV-2 infections in residents of a long-term care skilled nursing facility (March 27, 2020)

• Use of in situ simulation to evaluate the operational readiness of a high-consequence infectious disease intensive care unit (March 27, 2020)

• Simulation as a tool for assessing and evolving your current personal protective equipment: lessons learned during the coronavirus disease (COVID-19) pandemic (March 27, 2020)

• Quantitative detection and viral load analysis of SARS-CoV-2 in infected patients (March 27, 2020)

• COVID-19 infection in a patient with end-stage kidney disease (March 27, 2020)

• Safe delivery for COVID-19 infected pregnancies (March 26, 2020)

• Advice regarding COVID-19 and use of immunomodulators, in patients with severe dermatological diseases (March 26, 2020)

• Possible vertical transmission of SARS-CoV-2 from an infected mother to her newborn (March 26, 2020)

• Antibodies in infants born to mothers with COVID-19 pneumonia (March 26, 2020)

• Public health responses to COVID-19 outbreaks on cruise ships - worldwide, FebruaryMarch 2020 (March 26, 2020)

• Detection of serum immunoglobulin M and immunoglobulin G antibodies in 2019-novel coronavirus infected cases from different stages: (March 26, 2020)

• Coronavirus tests: researchers chase new diagnostics to fight the pandemic (March 23, 2020)

• Case-fatality rate and characteristics of patients dying in relation to COVID-19 in Italy (March 23, 2020)

• Covert coronavirus infections could be seeding new outbreaks (March 20, 2020)

• AI-driven tools for coronavirus outbreak: need of active learning and cross-population train/test models on multitudinal/multimodal data (March 18, 2020)

• A Trial of LopinavirRitonavir in Adults Hospitalized with Severe Covid-19 (March 18, 2020)

• Epidemiological Characteristics of 2143 Pediatric Patients With 2019 Coronavirus Disease in China (March 16, 2020)

• Investigation of three clusters of COVID-19 in Singapore: implications for surveillance and response measures (March 16, 2020)

• Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study (March 11, 2020)

• Clinical presentation and virological assessment of hospitalized cases of coronavirus disease 2019 in a travel-associated transmission cluster (March 08, 2020)

• First case of 2019 novel coronavirus in the United States (March 05, 2020)

• Rapid establishment of laboratory diagnostics for the novel coronavirus SARS-CoV-2 in Bavaria, Germany, February 2020 (March 05, 2020)

• Transmission routes of 2019-nCoV and controls in dental practice (March 03, 2020)

• Potential Factors Influencing Repeated SARS Outbreaks in China (March 03, 2020)

• Evidence for gastrointestinal infection of SARS-CoV-2 (February 27, 2020)

• COVID-19: Gastrointestinal manifestations and potential fecal-oral transmission (February 26, 2020)

• A novel coronavirus from patients with pneumonia in China, 2019 (February 20, 2020)

• Overlapping and discrete aspects of the pathology and pathogenesis of the emerging human pathogenic coronaviruses SARSCoV, MERSCoV, and 2019nCoV (February 13, 2020)

• A new coronavirus associated with human respiratory disease in China (February 03, 2020)

• Genomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding (January 30, 2020)

• The 2019new coronavirus epidemic: Evidence for virus evolution (January 29, 2020)

• A familial cluster of pneumonia associated with the 2019 novel coronavirus indicating person-to-person transmission: a study of a family cluster (January 24, 2020)

• Detectable 2019-nCoV viral RNA in blood is a strong indicator for the further clinical severity (January 01, 2020)

Data description

Graph data are composed of not only datum records (nodes) but also relations (edges) among datum records. The literature graph LG-covid19-HOTP is generated in the following way. We started with 14,584 seed articles. We make a forward span by searching the articles that cite the seed articles, and name the set as the foreground HOTP-FG, which includes the seed articles. We then make a backward span from HOTP-FG by tracing all the reference (outCitation) lists. See the Venn diagram in Fig. 1. We complete the graphs with citation links among the collected article records.

Fig.1 - LG-covid19-HOTP node set formation: from 14,584 seed articles to the foreground set of 41,404 articles by a forward span, and to the final set of 485,097 articles by a backward span from HOTP-FG.

We will make updates of the literature graph. We take input from the research community on seminal or noticeable articles that are missed in the current collection.

Basic metadata analysis & visualization

Fig.2 - Weekly histogram of 41,404 HOTP articles in 2020 (as of May 7, 2020).

Fig.3 - Histograms of article counts by publication year: the one in red is with the dataset HOTP-ForeGround (41,404 in total); in blue, with the dataset HOTP-BackGround (485,097 in total), and in gold, with CORD-19 version 12 (59,000 in total).

Fig.4 - Geographic map of 1,657 institutes with publications in the LG-covid19-HOTP data set. The map is a contribution of Konstantinos Kitsios. Click on the image for interactive visualization.

Fig.5 - Rank-size distributions of in-citation count to the 14,584 seed articles from 5 data sources: (1) LG-covid19-HOTP-Background (HOTP-BG) with inCitation lists and counts (list lengths) available; (2) Crossref with counts available; . (3) S2-API with lists and counts availalbe; (4) S2-ORC, as of Nov. 2019, with lists and counts availalbe; (5) Scopus with lists and counts available. The 14,584 seed papers are highly cited, according to HOTP and Crossref.

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Fig.7 - Rank-size distribution of outCitaion count over HOTP (41,404 articles) among two data sources: left, HOTP (including the seed articles, forward span and backward span) with outCitation lists and counts available; right, Crossref with counts available. By the well-matched profiles, the HOTP dataset captures most of the outCitation links.

Top lists

[A] Top 10 HOTP-FG articles (within HOTP-FG, v1.0.0: March 26, 2020)

1. W. Li, Bats are natural reservoirs of SARS-like coronaviruses, Science, 310:5748 pp676-679, 2005
2. F Carrat, A Flahault, Influenza vaccine: The challenge of antigenic drift, Vaccine, 25:39-40 pp6852-6862, 2007
3. Aaron R. Everitt, Simon Clare, Thomas Pertel et. al., IFITM3 restricts the morbidity and mortality associated with influenza, Nature, 484:7395, pp519-523, 2012
4. Na Zhu, Dingyu Zhang, Wenling Wang et. al., A novel coronavirus from patients with pneumonia in China, 2019, New England Journal of Medicine, 382:8 pp727-733, 2020
5. B. Zhou, M. E. Donnelly, D. T. Scholes et. al., Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human Influenza A viruses, Journal of Virology, 83:19 pp10309-10313, 2009
6. Qun Li, Xuhua Guan, Peng Wu et. al., Early transmission dynamics in Wuhan, china, of novel coronavirusinfected pneumonia, New England Journal of Medicine ppNEJMoa2001316, 2020
7. Y. Fujii, H. Goto, T. Watanabe et. al., Selective incorporation of influenza virus RNA segments into virions, Proceedings of the National Academy of Sciences, 100:4 pp2002-2007, 2003
8. Chaolin Huang, Yeming Wang, Xingwang Li et. al., Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China, The Lancet, 395:10223 pp497-506, 2020
9. C. H. Calisher, J. E. Childs, H. E. Field et. al., Bats: Important reservoir hosts of emerging viruses, Clinical Microbiology Reviews, 19:3 pp531-545, 2006
10. Xing-Yi Ge, Jia-Lu Li, Xing-Lou Yang et. al., Isolation and characterization of a bat SARS-like coronavirus that uses the ACE2 receptor, Nature, 503:7477 pp535-538, 2013

[B] Top 10 HOTP-FG articles (within HOTP, v1.0.0: March 26, 2020)

1. W. Li, Bats are natural reservoirs of SARS-like coronaviruses, Science, 310:5748 pp676-679, 2005
2. Sun-Woo Yoon, Richard J. Webby, Robert G. Webster, Evolution and Ecology of Influenza A Viruses, Influenza Pathogenesis and Control - Volume I, 385: pp359-375, 2014
3. F Carrat, A Flahault, Influenza vaccine: The challenge of antigenic drift, Vaccine, 25:39-40 pp6852-6862, 2007
4. Aaron R. Everitt, Simon Clare, Thomas Pertel et. al., IFITM3 restricts the morbidity and mortality associated with influenza, Nature, 484:7395, pp519-523, 2012
5. C. H. Calisher, J. E. Childs, H. E. Field et. al., Bats: Important reservoir hosts of emerging viruses, Clinical Microbiology Reviews, 19:3 pp531-545, 2006
6. V. Stalin Raj, Huihui Mou, Saskia L. Smits et. al., Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC, Nature, 495:7440 pp251-254, 2013
7. Na Zhu, Dingyu Zhang, Wenling Wang et. al., A novel coronavirus from patients with pneumonia in China, 2019, New England Journal of Medicine, 382:8 pp727-733, 2020
8. B. Zhou, M. E. Donnelly, D. T. Scholes et. al., Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human Influenza A viruses, Journal of Virology, 83:19 pp10309-10313, 2009
9. S. Tong, Y. Li, P. Rivailler et. al., A distinct lineage of influenza A virus from bats, Proceedings of the National Academy of Sciences, 109:11 pp4269-4274, 2012
10. Jianhua Sui, William C Hwang, Sandra Perez et. al., Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses, Nature Structural & Molecular Biology, 16:3 pp265-273, 2009

[C] Top 10 HOTP-FG articles (by Crossref counts, v1.0.0: March 26, 2020)

1. William M. Schneider, Meike Dittmann Chevillotte, Charles M. Rice, Interferon-stimulated genes: A complex web of host defenses, Annual Review of Immunology, 32:1 pp513-545, 2014
2. W. Li, Bats are natural reservoirs of SARS-like coronaviruses, Science, 310:5748 pp676-679, 2005
3. Jianhua Sui, William C Hwang, Sandra Perez et. al., Structural and functional bases for broad-spectrum neutralization of avian and human influenza A viruses, Nature Structural & Molecular Biology, 16:3 pp265-273, 2009
4. C. H. Calisher, J. E. Childs, H. E. Field et. al., Bats: Important reservoir hosts of emerging viruses, Clinical Microbiology Reviews, 19:3 pp531-545, 2006
5. Suxiang Tong, Xueyong Zhu, Yan Li et. al., New world bats harbor diverse influenza A viruses, PLoS Pathogens, 9:10 ppe1003657, 2013
6. Finlay McNab, Katrin Mayer-Barber, Alan Sher et. al., Type I interferons in infectious disease, Nature Reviews Immunology, 15:2 pp87-103, 2015
7. S. Tong, Y. Li, P. Rivailler et. al., A distinct lineage of influenza A virus from bats, Proceedings of the National Academy of Sciences, 109:11 pp4269-4274, 2012
8. V. Stalin Raj, Huihui Mou, Saskia L. Smits et. al., Dipeptidyl peptidase 4 is a functional receptor for the emerging human coronavirus-EMC, Nature, 495:7440 pp251-254, 2013
9. Chaolin Huang, Yeming Wang, Xingwang Li et. al., Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China, The Lancet, 395:10223 pp497-506, 2020
10. Mark Itzstein, The war against influenza: discovery and development of sialidase inhibitors, Nature Reviews Drug Discovery, 6:12 pp967-974, 2007

Seed lists

• Anita K. McElroy, Rama S. Akondy, Carl W. Davis et. al., Human Ebola virus infection results in substantial immune activation, Proceedings of the National Academy of Sciences

• Ali H Ellebedy, Katherine J L Jackson, Haydn T Kissick et. al., Defining antigen-specific plasmablast and memory B cell subsets in human blood after viral infection or vaccination, Nature Immunology

• Marios Koutsakos, Adam K. Wheatley, Liyen Loh et. al., Circulating T _FH cells, serological memory, and tissue compartmentalization shape human influenza-specific B cell immunity, Science Translational Medicine

• Zhongfang Wang, Lingyan Zhu, Thi H. O. Nguyen et. al., Clonally diverse CD38⁺HLA-DR⁺CD8⁺ T cells persist during fatal H7N9 disease, Nature Communications

• Zhe Xu, Lei Shi, Yijin Wang et. al., Pathological findings of COVID-19 associated with acute respiratory distress syndrome, The Lancet Respiratory Medicine

• Z. Wang, A. Zhang, Y. Wan et. al., Early hypercytokinemia is associated with interferon-induced transmembrane protein-3 dysfunction and predictive of fatal H7N9 infection, Proceedings of the National Academy of Sciences

• , , Aaron R. Everitt et. al., IFITM3 restricts the morbidity and mortality associated with influenza, Nature

• Zhongfang Wang, Yanmin Wan, Chenli Qiu et. al., Recovery from severe H7N9 disease is associated with diverse response mechanisms dominated by CD8⁺ T cells, Nature Communications

• Zhengli Shi, Zhihong Hu, A review of studies on animal reservoirs of the SARS coronavirus, Virus Research

• Hamzah A. Mohd, Jaffar A. Al-Tawfiq, Ziad A. Memish, Middle East Respiratory Syndrome Coronavirus (MERS-CoV) origin and animal reservoir, Virology Journal

• W. Li, Bats are natural reservoirs of SARS-like coronaviruses, Science

• Xiaolu Tang, Changcheng Wu, Xiang Li et. al., On the origin and continuing evolution of SARS-CoV-2, National Science Review

• Lanying Du, Yuxian He, Yusen Zhou et. al., The spike protein of SARS-CoV  a target for vaccine and therapeutic development, Nature Reviews Microbiology

• Rino Rappuoli, Glycoconjugate vaccines: Principles and mechanisms, Science Translational Medicine

• Jasper Fuk-Woo Chan, Kin-Hang Kok, Zheng Zhu et. al., Genomic characterization of the 2019 novel human-pathogenic coronavirus isolated from a patient with atypical pneumonia after visiting Wuhan, Emerging Microbes & Infections

• Weilong Shang, Yi Yang, Yifan Rao et. al., The outbreak of SARS-CoV-2 pneumonia calls for viral vaccines, npj Vaccines

• Xiaobo Lei, Xia Xiao, Jianwei Wang, Innate immunity evasion by enteroviruses: insights into virus-host interaction, Viruses

• B. Zhou, M. E. Donnelly, D. T. Scholes et. al., Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and swine origin human Influenza A viruses, Journal of Virology

• Y. Muramoto, A. Takada, K. Fujii et. al., Hierarchy among viral RNA (VRNA) segments in their role in VRNA incorporation into influenza A virions, Journal of Virology

• Seema S. Lakdawala, Yicong Wu, Peter Wawrzusin et. al., Influenza A virus assembly intermediates fuse in the cytoplasm, PLoS Pathogens

• Marie Gerber, Catherine Isel, Vincent Moules et. al., Selective packaging of the Influenza A genome and consequences for genetic reassortment, Trends in Microbiology

• Y. Fujii, H. Goto, T. Watanabe et. al., Selective incorporation of influenza virus RNA segments into virions, Proceedings of the National Academy of Sciences

• Graham D. Williams, Dana Townsend, Kristine M. Wylie et. al., Nucleotide resolution mapping of influenza A virus nucleoprotein-RNA interactions reveals RNA features required for replication, Nature Communications

• Alfred T. Harding, Brook E. Heaton, Rebekah E. Dumm et. al., Rationally designed influenza virus vaccines that are antigenically stable during growth in eggs, mBio

• Brook E. Heaton, Edward M. Kennedy, Rebekah E. Dumm et. al., A CRISPR activation screen identifies a pan-avian Influenza virus inhibitory host factor, Cell Reports

• Catherine A. Freije, Cameron Myhrvold, Chloe K. Boehm et. al., Programmable inhibition and detection of RNA viruses using Cas13, Molecular Cell

• Ruth McBride, Marjorie Zyl, Burtram Fielding, The coronavirus nucleocapsid is a multifunctional protein, Viruses

• Julie L. McAuley, Brad P. Gilbertson, Sanja Trifkovic et. al., Influenza virus neuraminidase structure and functions, Frontiers in Microbiology

• Emmie Wit, Friederike Feldmann, Jacqueline Cronin et. al., Prophylactic and therapeutic remdesivir (GS-5734) treatment in the rhesus macaque model of MERS-CoV infection, Proceedings of the National Academy of Sciences

• Calvin J Gordon, Egor P Tchesnokov, Joy Y. Feng et. al., The antiviral compound remdesivir potently inhibits RNA-dependent RNA polymerase from Middle East respiratory syndrome coronavirus, Journal of Biological Chemistry

• Rachel J. Jackson, Katy L. Cooper, Paul Tappenden et. al., Oseltamivir, zanamivir and amantadine in the prevention of Influenza: A systematic review, Journal of Infection

• Chakkrapong Handumrongkul, Alice L. Ye, Stephen A. Chmura et. al., Durable multitransgene expression in vivo using systemic, nonviral DNA delivery, Science Advances

• F Carrat, A Flahault, Influenza vaccine: The challenge of antigenic drift, Vaccine

• Michael Breen, Aitor Nogales, Steven Baker et. al., Replication-competent Influenza A viruses expressing reporter genes, Viruses

• Chaolin Huang, Yeming Wang, Xingwang Li et. al., Clinical features of patients infected with 2019 novel coronavirus in Wuhan, China, The Lancet

• Peng Zhou, Xing-Lou Yang, Xian-Guang Wang et. al., A pneumonia outbreak associated with a new coronavirus of probable bat origin, Nature

• Zunyou Wu, Jennifer M. McGoogan, Characteristics of and important lessons from the coronavirus disease 2019 (COVID-19) outbreak in China: Summary of a report of 72314 cases from the Chinese Center for Disease Control and Prevention, JAMA

• Timothy P. Sheahan, Amy C. Sims, Sarah R. Leist et. al., Comparative therapeutic efficacy of remdesivir and combination lopinavir, ritonavir, and interferon beta against MERS-CoV, Nature Communications

• Neeltje Doremalen, Trenton Bushmaker, Dylan H. Morris et. al., Aerosol and surface stability of SARS-CoV-2 as compared with SARS-CoV-1, New England Journal of Medicine

• Qun Li, Xuhua Guan, Peng Wu et. al., Early transmission dynamics in Wuhan, china, of novel coronavirusinfected pneumonia, New England Journal of Medicine

• Michelle L. Holshue, Chas DeBolt, Scott Lindquist et. al., First case of 2019 novel coronavirus in the United States, New England Journal of Medicine

• Manli Wang, Ruiyuan Cao, Leike Zhang et. al., Remdesivir and chloroquine effectively inhibit the recently emerged novel coronavirus (2019-nCoV) in vitro, Cell Research

• Camilla Rothe, Mirjam Schunk, Peter Sothmann et. al., Transmission of 2019-nCoV infection from an asymptomatic contact in Germany, New England Journal of Medicine

• Timothy R. Abbott, Girija Dhamdhere, Yanxia Liu et. al., Development of CRISPR as a prophylactic strategy to combat novel coronavirus and influenza, bioRxiv

• Irani Thevarajan, Thi H. O. Nguyen, Marios Koutsakos et. al., Breadth of concomitant immune responses prior to patient recovery: a case report of non-severe COVID-19, Nature Medicine

• Travis K. Warren, Robert Jordan, Michael K. Lo et. al., Therapeutic efficacy of the small molecule GS-5734 against Ebola virus in rhesus monkeys, Nature

• Fan Wu, Su Zhao, Bin Yu et. al., A new coronavirus associated with human respiratory disease in China, Nature

• Domenico Benvenuto, Marta Giovanetti, Alessandra Ciccozzi et. al., The 2019new coronavirus epidemic: Evidence for virus evolution, Journal of Medical Virology

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• Xiaoyang Hong, Jing Xiong, Zhichun Feng et. al., Extracorporeal membrane oxygenation (ECMO): does it have a role in the treatment of severe COVID-19?, International Journal of Infectious Diseases

• Takeshi Moriguchi, Norikazu Harii, Junko Goto et. al., A first Case of Meningitis/Encephalitis associated with SARS-Coronavirus-2, International Journal of Infectious Diseases

• Siukan Law, Albert Wingnang Leung, Chuanshan Xu, Severe Acute Respiratory Syndrome (SARS) and Coronavirus disease-2019 (COVID-19): From Causes to Preventions in Hong Kong, International Journal of Infectious Diseases

• Ka-Tim Choy, Alvina Yin-Lam Wong, Prathanporn Kaewpreedee et. al., Remdesivir, lopinavir, emetine, and homoharringtonine inhibit SARS-CoV-2 replication in vitro, Antiviral Research

• Jacques Fantini, Coralie Di Scala, Henri Chahinian et. al., Structural and molecular modeling studies reveal a new mechanism of action of chloroquine and hydroxychloroquine against SARS-CoV-2 infection, International Journal of Antimicrobial Agents

• Shuangyi Sun, Keting Yu, Zhen Xie et. al., China empowers Internet hospital to fight against COVID-19, Journal of Infection

• Mahmoud Kandeel, Mohammed Al-Nazawi, Virtual screening and repurposing of FDA approved drugs against COVID-19 main protease, Life Sciences

• Jude Bayham, Eli P Fenichel, Impact of school closures for COVID-19 on the US health-care workforce and net mortality: a modelling study, The Lancet Public Health

• Andrew R. Chapman, Anda Bularga, Nicholas L. Mills, High-Sensitivity Cardiac Troponin Can Be An Ally in the Fight Against COVID-19, Circulation

• Muhammad Yousuf Ali, Peter Gatiti, The COVID-19 (Coronavirus) Pandemic: Reflections on the Roles of Librarians and Information Professionals, Health Information & Libraries Journal

• Jian Sun, Alessio Aghemo, Alejandro Forner et. al., COVID-19 and liver disease, Liver International

• Jing-Yu Chen, Kun Qiao, Feng Liu et. al., Lung transplantation as therapeutic option in acute respiratory distress syndrome for COVID-19-related pulmonary fibrosis:, Chinese Medical Journal

• Hong-Mei Zhao, Yu-Xiao Xie, Chen Wang, Recommendations for respiratory rehabilitation in adults with COVID-19:, Chinese Medical Journal

• Young-Rock Hong, John Lawrence, Dunc Williams Jr et. al., Population-Level Interest and Telehealth Capacity of US Hospitals in Response to COVID-19: Cross-Sectional Analysis of Google Search and National Hospital Survey Data, JMIR Public Health and Surveillance

• Kai Gong, Zhong Xu, Zhefeng Cai et. al., Internet hospitals help prevent and control the epidemic of COVID-19 in China: a multicenter user profiling study (Preprint), Journal of Medical Internet Research

• Peivand Bastani, Mohammad Amin Bahrami, COVID-19 Related Misinformation on Social Media: A Qualitative Study from Iran (Preprint), Journal of Medical Internet Research

• Ido Zamberg, Sergio Manzano, Klara Posfay-Barbe et. al., Utilization of a mobile platform for the dissemination of validated institutional measurements during CoVid-19 Outbreak : A practical example in the Childrens Hospital (Preprint), JMIR Public Health and Surveillance

• Amaryllis Mavragani, Tracking COVID-19 in Europe: An Infodemiology Study (Preprint), JMIR Public Health and Surveillance

• Sk. Mallineni, Np. Innes, Dp. Raggio et. al., Coronavirus Disease (COVID-19): Characteristics in children and considerations for Dentists providing their care, International Journal of Paediatric Dentistry

• Stella M. Papa, Patrik Brundin, Victor S.C. Fung et. al., Impact of the COVID-19 pandemic on Parkinson’s disease and movement disorders: COVID-19 pandemic and PD, Movement Disorders

• Giacomo Grasselli, Alberto Zangrillo, Alberto Zanella et. al., Baseline Characteristics and Outcomes of 1591 Patients Infected With SARS-CoV-2 Admitted to ICUs of the Lombardy Region, Italy, JAMA

• Lesley Gibson, David Rush, Novel Coronavirus in Cape Town Informal Settlements: Feasibility of Using Informal Dwelling Outlines to Identify High Risk Areas for COVID-19 Transmission From A Social Distancing Perspective, JMIR Public Health and Surveillance

• Gian Paolo Rossi, Viola Sanga, Matthias Barton, Potential harmful effects of discontinuing ACE-inhibitors and ARBs in COVID-19 patients, eLife

• Brett G. Toresdahl, Irfan M. Asif, Coronavirus Disease 2019 (COVID-19): Considerations for the Competitive Athlete, Sports Health: A Multidisciplinary Approach

• Daniele Canarutto, Alessio Priolo, Gianni Russo et. al., COVID-19 infection in a paucisymptomatic infant: Raising the index of suspicion in epidemic settings, Pediatric Pulmonology

• Mushtaq Hussain, Nusrat Jabeen, Fozia Raza et. al., Structural Variations in Human ACE2 may Influence its Binding with SARS-CoV-2 Spike Protein, Journal of Medical Virology

• Fabrizio Carletti, Eleonora Lalle, Francesco Messina et. al., About the origin of the first two Sars-CoV-2 infections in Italy: inference not supported by appropriate sequence analysis, Journal of Medical Virology

• Ya-nan Han, Zhan-wei Feng, Li-na Sun et. al., A comparative-descriptive analysis of clinical characteristics in 2019-Coronavirus-infected children and adults, Journal of Medical Virology

• Sebastian Gidlöf, Julia Savchenko, Thomas Brune et. al., COVID-19 in pregnancy with comorbidities: More liberal testing strategy is needed, Acta Obstetricia et Gynecologica Scandinavica

• Na Li, Lefei Han, Min Peng et. al., Maternal and neonatal outcomes of pregnant women with COVID-19 pneumonia: a case-control study, Clinical Infectious Diseases

• Stefano Puliatti, Ahmed Eissa, Radwa Eissa et. al., COVID-19 and Urology: A Comprehensive Review of the Literature, BJU International

• Eun Kim, Geza Erdos, Shaohua Huang et. al., Microneedle array delivered recombinant coronavirus vaccines: Immunogenicity and rapid translational development, EBioMedicine

• Hercílio Martelli-Júnior, Renato Assis Machado, Daniella R.B. Martelli et. al., Dental journals and coronavirus disease (COVID-19): A current view, Oral Oncology

• Corsino Rey Galán, Laia Alsina Manrique de Lara, Montserrat Antón Gamero et. al., Infección por coronavirus (COVID-19) en Anales de Pediatría, Anales de Pediatría

• Yuan-Chia Chang, Chin-Hua Yang, Yu-Chan Chien et. al., Author reply to Letters to the Editor CT chest findings in coronavirus disease (COVID-19), Journal of the Formosan Medical Association

• Si-qian Zheng, Li Yang, Peng-xiang Zhou et. al., Recommendations and guidance for providing pharmaceutical care services during COVID-19 pandemic: A China perspective, Research in Social and Administrative Pharmacy

• J.-J. Tuech, A. Gangloff, F. Di Fiore et. al., Strategy for the practice of digestive and oncological surgery during the Covid-19 epidemic, Journal of Visceral Surgery

• Hui Zhang, Yan Chen, Quan Yuan et. al., Identification of Kidney Transplant Recipients with Coronavirus Disease 2019, European Urology

• John G. Augoustides, Perioperative Echocardiography: Key Considerations During the Coronavirus Pandemic, Journal of Cardiothoracic and Vascular Anesthesia

• Shibo Jiang, Christopher Hillyer, Lanying Du, Neutralizing Antibodies against SARS-CoV-2 and Other Human Coronaviruses, Trends in Immunology

• Patricia Sequera Ortiz, Borja Quiroga Gili, Gabriel Arriba de la Fuente et. al., Protocolo de actuación ante la epidemia de enfermedad por coronavirus en los pacientes de diálisis y trasplantados renales, Nefrología

• Weiyi Tan, Jamil Aboulhosn, The cardiovascular burden of coronavirus disease 2019 (COVID-19) with a focus on congenital heart disease, International Journal of Cardiology

• Nisha Muralidharan, R. Sakthivel, D. Velmurugan et. al., Computational studies of drug repurposing and synergism of lopinavir, oseltamivir and ritonavir binding with SARS-CoV-2 Protease against COVID-19, Journal of Biomolecular Structure and Dynamics

• Jingzhong Wang, Yi Liao, Xiaoyang Wang et. al., Incidence of novel coronavirus (2019-nCoV) infection among people under home quarantine in Shenzhen, China, Travel Medicine and Infectious Disease

• Juan Pablo Escalera-Antezana, Nicolas Freddy Lizon-Ferrufino, Americo Maldonado-Alanoca et. al., Clinical features of the first cases and a cluster of Coronavirus Disease 2019 (COVID-19) in Bolivia imported from Italy and Spain, Travel Medicine and Infectious Disease

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• Xavier Hernandez-Alias, Martin Schaefer, Luis Serrano, Translational adaptation of human viruses to the tissues they infect, 2020

• Andra Waagmeester, Egon L. Willighagen, Andrew I. Su et. al., A protocol for adding knowledge to Wikidata, a case report, 2020

• Alistair Martin, Jama Nateqi, Stefanie Gruarin et. al., An artificial intelligence-based first-line defence against COVID-19: digitally screening citizens for risks via a chatbot, 2020

• Charles V Herst, Scott Burkholz, John Sidney et. al., An Effective CTL Peptide Vaccine for Ebola Zaire Based on Survivors’ CD8+ Targeting of a Particular Nucleocapsid Protein Epitope with Potential Implications for COVID-19 Vaccine Design, 2020

• Emily A Bruce, Meei-Li Huang, Garrett A Perchetti et. al., DIRECT RT-qPCR DETECTION OF SARS-CoV-2 RNA FROM PATIENT NASOPHARYNGEAL SWABS WITHOUT AN RNA EXTRACTION STEP, 2020

• Asif Shajahan, Nitin T Supekar, Anne S Gleinich et. al., Deducing the N- and O- glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2, 2020

• Ramya Rangan, Ivan N. Zheludev, Rhiju Das, RNA genome conservation and secondary structure in SARS-CoV-2 and SARS-related viruses, 2020

• Colline Lapina, Mathieu Rodic, Denis Peschanski et. al., The potential genetic network of human brain SARS-CoV-2 infection, 2020

• Marek Prachar, Sune Justesen, Daniel Bisgaard Steen-Jensen et. al., COVID-19 Vaccine Candidates: Prediction and Validation of 174 SARS-CoV-2 Epitopes, 2020

• Alejandro Lopez-Rincon, Alberto Tonda, Lucero Mendoza-Maldonado et. al., Accurate Identification of SARS-CoV-2 from Viral Genome Sequences using Deep Learning, 2020

• Yonghan Yu, Zhengtu Li, Yinhu Li et. al., CovProfile: profiling the viral genome and gene expressions of SARS-COV2, 2020

• Maria Bzowka, Karolina Mitusinska, Agata Raczynska et. al., Structural and Evolutionary Analysis Indicate that the SARS-CoV-2 Mpro is an Inconvenient Target for Small-Molecule Inhibitors Design, 2020

• Dhurvas Chandrasekaran Dinesh, Dominika Chalupska, Jan Silhan et. al., Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein, 2020

• Chunxi Zeng, Xucheng Hou, Jingyue Yan et. al., Leveraging mRNAs sequences to express SARS-CoV-2 antigens in vivo, 2020

• Tyler Wagner, Samir Awasthi, Gayle Wittenberg et. al., Real-time biomedical knowledge synthesis of the exponentially growing world wide web using unsupervised neural networks, 2020

• Neha Periwal, Sankritya Sarma, Pooja Arora et. al., In-silico analysis of SARS-CoV-2 genomes: Insights from SARS encoded non-coding RNAs, 2020

• Matteo Chiara, David S. Horner, Graziano Pesole, Comparative genomics suggests limited variability and similar evolutionary patterns between major clades of SARS-Cov-2, 2020

• Kai Duan, Bende Liu, Cesheng Li et. al., Effectiveness of convalescent plasma therapy in severe COVID-19 patients, Proceedings of the National Academy of Sciences

• Christine K. Johnson, Peta L. Hitchens, Pranav S. Pandit et. al., Global shifts in mammalian population trends reveal key predictors of virus spillover risk, Proceedings of the Royal Society B: Biological Sciences

Sources & tools

• CORD-19
• S2-API
• S2-ORC Snapshot 2019-11-01.
• Scopus
• Crossref
• SG-t-SNE
• Plotly and Bokeh for interactive visualizations
• JQuery QueryBuilder for composing queries

Change log

• v1.13.0: Reached 40,000 HOTP articles July, 16, 2020
• v1.12.0: 30,000 HOTP articles July, 02, 2020
• v1.11.0: Started bi-weekly updates June, 18, 2020
• v1.10.0: 7,000 new articles in 2020 June, 04, 2020
• v1.9.0: 3,000 new articles in 2020 May, 28, 2020
• v1.8.0: 2,000 new articles in 2020 May, 21, 2020
• v1.7.0: 4,000 new articles in 2020 May, 14, 2020
• v1.6.0: 2,000 new articles in 2020 May, 07, 2020
• v1.5.0: 6,000 new articles in 2020 April, 30, 2020
• v1.4.0: 4,000 new articles in 2020 April, 23, 2020
• v1.3.0: 800 new articles in 2020 April, 16, 2020
• Added interactive geographic map with institutes April, 12, 2020
• Added search utility in interactive embeddings April, 11, 2020
• v1.2.0: 2,000 new articles (1,700 in 2020) April 9, 2020
• v1.1.0: 1,000 new articles (200 in 2020) April 2, 2020
• Visualization becomes interactive March 27, 2020
• Webpage went online March 26, 2020

Acknowledgements

Thaleia-M. Passia, Konstantinos Kitsios, Xi Chen, Tony Goldish